| Pos | Team | Pld | Pts | GD | W | D | L | F | A |
|---|---|---|---|---|---|---|---|---|---|
| 1 | Doncaster Rovers | 46 | 59 | +27 | 21 | 17 | 8 | 65 | 38 |
| 2 | Halifax Town | 46 | 57 | +16 | 20 | 17 | 9 | 53 | 37 |
| 3 | Rochdale | 46 | 56 | +33 | 18 | 20 | 8 | 68 | 35 |
| 4 | Bradford City | 46 | 56 | +19 | 18 | 20 | 8 | 65 | 46 |
| 5 | 46 | 52 | +17 | 17 | 18 | 11 | 62 | 45 | |
| 6 | Colchester United | 46 | 52 | +4 | 20 | 12 | 14 | 57 | 53 |
| 7 | Southend United | 46 | 51 | +17 | 19 | 13 | 14 | 78 | 61 |
| 8 | Lincoln City | 46 | 51 | +2 | 17 | 17 | 12 | 54 | 52 |
| 9 | 46 | 50 | +9 | 18 | 14 | 14 | 61 | 52 | |
| 10 | Swansea Town | 46 | 49 | +4 | 19 | 11 | 16 | 58 | 54 |
| 11 | Brentford | 46 | 48 | -1 | 18 | 12 | 16 | 64 | 65 |
| 12 | 46 | 47 | -3 | 15 | 17 | 14 | 40 | 43 | |
| 13 | Port Vale | 46 | 46 | 0 | 16 | 14 | 16 | 46 | 46 |
| 14 | 46 | 45 | +10 | 16 | 13 | 17 | 76 | 66 | |
| 15 | Aldershot | 46 | 45 | 0 | 19 | 7 | 20 | 66 | 66 |
| 16 | Scunthorpe United | 46 | 44 | +1 | 18 | 8 | 20 | 61 | 60 |
| 17 | Exeter City | 46 | 43 | +1 | 16 | 11 | 19 | 66 | 65 |
| 18 | Peterborough United | 46 | 42 | +3 | 13 | 16 | 17 | 60 | 57 |
| 19 | Notts. County | 46 | 42 | -9 | 12 | 18 | 16 | 48 | 57 |
| 20 | 46 | 41 | -7 | 13 | 15 | 18 | 43 | 50 | |
| 21 | 46 | 39 | -22 | 14 | 11 | 21 | 53 | 75 | |
| 22 | Newport County | 46 | 36 | -25 | 11 | 14 | 21 | 49 | 74 |
| 23 | Grimsby Town | 46 | 33 | -22 | 9 | 15 | 22 | 47 | 69 |
| 24 | 46 | 20 | -74 | 5 | 10 | 31 | 32 | 106 |
Content retrieved from: http://stats.football.co.uk/league_tables/1968_1969/league_two/index.shtml.
